PL1047	SE2007	GSE121212_non-lesional_vs_lesional	2026-06-13 11:06:48	8	2026-05-27 20:30:34	"<?xml version=\""1.0\"" encoding=\""UTF-8\"" standalone=\""no\""?><series><measurement-lists><measurement-list id=\""All Measurements\"" name=\""All Measurements\""/><valued-measurement-list id=\""ML513560\"" name=\""Student's T-test &lt;0.05, no preprocessing\""/><valued-measurement-list id=\""ML513579\"" name=\""x1.4 Up|Dn Student's T-test &lt;0.05, no preprocessing\""/><measurement-list id=\""ML513640\"" name=\""Extract if 40 % of ProcessedSignals &lt;0 @[GSE121212-non-lesional]\""/><measurement-list id=\""ML513642\"" name=\""Extract if 60 % of ProcessedSignals &gt;0 @[GSE121212-non-lesional]\""/><measurement-list id=\""ML513641\"" name=\""Extract if 40 % of ProcessedSignals &lt;0 @[GSE121212-lesional]\""/><measurement-list id=\""ML513643\"" name=\""Extract if 60 % of ProcessedSignals &gt;0 @[GSE121212-lesional]\""/><measurement-list id=\""ML513639\"" name=\""ON @lesional\""/><measurement-list id=\""ML513644\"" name=\""OFF @lesional\""/><measurement-list id=\""ML513580\"" name=\""QC1: Remove if 50 % of Ch1RawSignals &lt;20 @2/2 in [Average]\""/><measurement-list id=\""ML513581\"" name=\""QC2: Remove if mean of ProcessedSignals in(-0.1..0.1) @2/2 in [Average]\""/><folder name=\""from QC2\""><valued-measurement-list id=\""ML513582\"" name=\""Student's T-test p&lt;0.05\""/><valued-measurement-list id=\""ML513583\"" name=\""Student's T-test p&lt;0.05, x1.4 Up|Dn\""/></folder><valued-measurement-list id=\""ML513573\"" name=\""edgeR p&lt;0.05\""/><valued-measurement-list id=\""ML513574\"" name=\""DESeq2 p&lt;0.05\""/><measurement-list id=\""ML513645\"" name=\""intersection, no fol change, no preprocessing\""/><valued-measurement-list id=\""ML513650\"" name=\""intersection, no fol change, no preprocessing, x1.4 Up|Dn\""/><measurement-list id=\""ML513651\"" name=\""intersection, no fol change, no preprocessing, NOT x1.4 Up|Dn\""/><measurement-list id=\""ML513647\"" name=\""edgeR|DESeq2 only, no fol change, no preprocessing\""/><measurement-list id=\""ML513648\"" name=\""edgeR|DESeq2 only, no fol change, no preprocessing, counts&gt;20\""/><measurement-list id=\""ML513649\"" name=\""edgeR|DESeq2 only, no fol change, no preprocessing, NOT counts&gt;20\""/><measurement-list id=\""ML513646\"" name=\""t-test only, no fol change, no preprocessing\""/></measurement-lists><profiles/><datasets><dataset id=\""DS5437\"" name=\""All Samples\""/><dataset id=\""DS5436\"" name=\""Average\""/></datasets><sample-groups><dataset-ref ref=\""DS5437\""><sample-group id=\""SMG346204\"" name=\""non-lesional-AD_4-GSM3427869-3.0858603\""/><sample-group id=\""SMG346205\"" name=\""non-lesional-AD_5-GSM3427871-3.0559275\""/><sample-group id=\""SMG346206\"" name=\""non-lesional-AD_6-GSM3427873-2.7061286\""/><sample-group id=\""SMG346207\"" name=\""non-lesional-AD_7-GSM3427875-3.9808908\""/><sample-group id=\""SMG346208\"" name=\""non-lesional-AD_9-GSM3427877-3.05223\""/><sample-group id=\""SMG346209\"" name=\""non-lesional-AD_11-GSM3427879-3.3543491\""/><sample-group id=\""SMG346210\"" name=\""non-lesional-AD_14-GSM3427881-2.7507706\""/><sample-group id=\""SMG346211\"" name=\""non-lesional-AD_16-GSM3427883-2.7693863\""/><sample-group id=\""SMG346212\"" name=\""non-lesional-AD_17-GSM3427885-3.2591918\""/><sample-group id=\""SMG346213\"" name=\""non-lesional-AD_19-GSM3427887-2.8508844\""/><sample-group id=\""SMG346214\"" name=\""non-lesional-AD_20-GSM3427889-2.8202362\""/><sample-group id=\""SMG346215\"" name=\""non-lesional-AD_21-GSM3427891-3.2591915\""/><sample-group id=\""SMG346216\"" name=\""non-lesional-AD_23-GSM3427893-2.9537284\""/><sample-group id=\""SMG346217\"" name=\""non-lesional-AD_24-GSM3427895-2.7202692\""/><sample-group id=\""SMG346218\"" name=\""non-lesional-AD_25-GSM3427897-2.9557998\""/><sample-group id=\""SMG346219\"" name=\""non-lesional-AD_26-GSM3427899-2.8463488\""/><sample-group id=\""SMG346220\"" name=\""non-lesional-AD_27-GSM3427901-3.194871\""/><sample-group id=\""SMG346221\"" name=\""non-lesional-AD_28-GSM3427903-2.9403362\""/><sample-group id=\""SMG346222\"" name=\""non-lesional-AD_29-GSM3427905-3.0291462\""/><sample-group id=\""SMG346223\"" name=\""non-lesional-AD_31-GSM3427909-2.9700842\""/><sample-group id=\""SMG346224\"" name=\""lesional-AD_4-GSM3427868-3.1307876\""/><sample-group id=\""SMG346225\"" name=\""lesional-AD_5-GSM3427870-2.8492796\""/><sample-group id=\""SMG346226\"" name=\""lesional-AD_6-GSM3427872-2.7298582\""/><sample-group id=\""SMG346227\"" name=\""lesional-AD_7-GSM3427874-3.6438553\""/><sample-group id=\""SMG346228\"" name=\""lesional-AD_9-GSM3427876-2.7756453\""/><sample-group id=\""SMG346229\"" name=\""lesional-AD_11-GSM3427878-3.0696192\""/><sample-group id=\""SMG346230\"" name=\""lesional-AD_14-GSM3427880-3.0150392\""/><sample-group id=\""SMG346231\"" name=\""lesional-AD_16-GSM3427882-2.1637545\""/><sample-group id=\""SMG346232\"" name=\""lesional-AD_17-GSM3427884-2.8053527\""/><sample-group id=\""SMG346233\"" name=\""lesional-AD_19-GSM3427886-2.5516863\""/><sample-group id=\""SMG346234\"" name=\""lesional-AD_20-GSM3427888-2.836501\""/><sample-group id=\""SMG346235\"" name=\""lesional-AD_21-GSM3427890-3.3311167\""/><sample-group id=\""SMG346236\"" name=\""lesional-AD_23-GSM3427892-3.1728125\""/><sample-group id=\""SMG346237\"" name=\""lesional-AD_24-GSM3427894-2.3299654\""/><sample-group id=\""SMG346238\"" name=\""lesional-AD_25-GSM3427896-2.3903148\""/><sample-group id=\""SMG346239\"" name=\""lesional-AD_26-GSM3427898-2.4562292\""/><sample-group id=\""SMG346240\"" name=\""lesional-AD_27-GSM3427900-3.0064259\""/><sample-group id=\""SMG346241\"" name=\""lesional-AD_28-GSM3427902-2.9465017\""/><sample-group id=\""SMG346242\"" name=\""lesional-AD_29-GSM3427904-2.8463488\""/><sample-group id=\""SMG346243\"" name=\""lesional-AD_31-GSM3427908-2.5399857\""/></dataset-ref><dataset-ref ref=\""DS5436\""><sample-group id=\""SMG345769\"" name=\""GSE121212-non-lesional\""/><sample-group id=\""SMG345773\"" name=\""GSE121212-lesional\""/></dataset-ref></sample-groups><trees><dataset-ref ref=\""DS5437\""><tree2d id=\""TR3282\"" name=\""intersection, no fol change, no preprocessing\""/><tree2d id=\""TR3281\"" name=\""edgeR|DESeq2 only, no fold change, no preprocessing, counts&gt;20\""/><tree2d id=\""TR3279\"" name=\""edgeR|DESeq2 only, no fold change, no preprocessing, NOT counts&gt;20\""/><tree2d id=\""TR3280\"" name=\""t-test only, no fol change, no preprocessing\""/></dataset-ref><dataset-ref ref=\""DS5436\""/></trees><pathways/></series>"	1	2026-06-13 11:11:08	GSE121212_edgeR_DESeq2_script.txt	https://www.ncbi.nlm.nih.gov/gds/query/acc.cgi?acc=GSE65832\r\nhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE121212\r\nhttps://www.ncbi.nlm.nih.gov/gds/query/acc.cgi?acc=GSE140227
