PL1047	SE2010	GSE121212_paired_non-lesional_&_lesional	2026-06-15 11:58:07	5	2026-05-27 20:30:34	"<?xml version=\""1.0\"" encoding=\""UTF-8\"" standalone=\""no\""?><series><measurement-lists><measurement-list id=\""All Measurements\"" name=\""All Measurements\""/><valued-measurement-list id=\""ML513688\"" name=\""Paired T-test P&lt;0.05 (paired)\""/><valued-measurement-list id=\""ML513690\"" name=\""edgeR_DESeq23_All_Pvalues (paired)\""/><valued-measurement-list id=\""ML513691\"" name=\""edgeR p&lt;0.05 (paired)\""/><valued-measurement-list id=\""ML513692\"" name=\""DESeq2 p&lt;0.05 (paired)\""/><measurement-list id=\""ML513697\"" name=\""QC1: Remove if 50 % of Ch1RawSignals &lt;20 @2/2 in [Average]\""/><folder name=\""from QC1\""><measurement-list id=\""ML513721\"" name=\""Paired T-test P&lt;0.05 (paired) &amp; QC1\""/><measurement-list id=\""ML513719\"" name=\""edgeR p&lt;0.05 &amp; QC1 (paired)\""/><measurement-list id=\""ML513720\"" name=\""DESeq2 p&lt;0.05 &amp; QC1 (paired)\""/><measurement-list id=\""ML513698\"" name=\""intersection P&lt;0.05 &amp; QC1 (paired)\""/><measurement-list id=\""ML513699\"" name=\""t-test only P&lt;0.05 &amp; QC1 (paired)\""/><folder name=\""from t-test only P&lt;0.05 &amp; QC1 (paired)\""><measurement-list id=\""ML513704\"" name=\""cluster1\""/><measurement-list id=\""ML513705\"" name=\""cluster2\""/><measurement-list id=\""ML513706\"" name=\""cluster3\""/><measurement-list id=\""ML513707\"" name=\""cluster4\""/><measurement-list id=\""ML513708\"" name=\""cluster5\""/></folder><folder name=\""brought from 2 group comparison, combined with QC1\""><measurement-list id=\""ML513717\"" name=\""edgeR p&lt;0.05 &amp; QC1 (2 gourps)\""/><measurement-list id=\""ML513718\"" name=\""DESeq2 p&lt;0.05 &amp; QC1 (2 gourps)\""/><measurement-list id=\""ML513723\"" name=\""Student's T-test &lt;0.05, no preprocessing &amp; QC1 (2 groups)\""/><measurement-list id=\""ML513724\"" name=\""edgeR or DESeq2 p&lt;0.05 &amp; QC1 (2 gourps)\""/></folder></folder><folder name=\""brought from 2 groups comparison\""><valued-measurement-list id=\""ML513715\"" name=\""edgeR p&lt;0.05 (2 gourps)\""/><valued-measurement-list id=\""ML513716\"" name=\""DESeq2 p&lt;0.05 (2 gourps)\""/><valued-measurement-list id=\""ML513722\"" name=\""Student's T-test &lt;0.05, no preprocessing (2 groups)\""/></folder></measurement-lists><profiles/><datasets><dataset id=\""DS5447\"" name=\""All Samples\""/><dataset id=\""DS5448\"" name=\""Lesional Samples\""/><dataset id=\""DS5446\"" name=\""Average\""/></datasets><sample-groups><dataset-ref ref=\""DS5447\""><sample-group id=\""SMG346502\"" name=\""AD_4-non-lesional-3.0858603-0\""/><sample-group id=\""SMG346503\"" name=\""AD_4-lesional-3.1307876-0.2942866\""/><sample-group id=\""SMG346504\"" name=\""AD_5-non-lesional-3.0559275-0\""/><sample-group id=\""SMG346505\"" name=\""AD_5-lesional-2.8492796--0.4818371\""/><sample-group id=\""SMG346506\"" name=\""AD_6-non-lesional-2.7061286-0\""/><sample-group id=\""SMG346507\"" name=\""AD_6-lesional-2.7298582--0.4429543\""/><sample-group id=\""SMG346508\"" name=\""AD_7-non-lesional-3.9808908-0\""/><sample-group id=\""SMG346509\"" name=\""AD_7-lesional-3.6438553-1.3138899\""/><sample-group id=\""SMG346510\"" name=\""AD_9-non-lesional-3.05223-0\""/><sample-group id=\""SMG346511\"" name=\""AD_9-lesional-2.7756453-0.3853305\""/><sample-group id=\""SMG346512\"" name=\""AD_11-non-lesional-3.3543491-0\""/><sample-group id=\""SMG346513\"" name=\""AD_11-lesional-3.0696192-0.61339\""/><sample-group id=\""SMG346514\"" name=\""AD_14-non-lesional-2.7507706-0\""/><sample-group id=\""SMG346515\"" name=\""AD_14-lesional-3.0150392-0.0086133\""/><sample-group id=\""SMG346516\"" name=\""AD_16-non-lesional-2.7693863-0\""/><sample-group id=\""SMG346517\"" name=\""AD_16-lesional-2.1637545--0.7827472\""/><sample-group id=\""SMG346518\"" name=\""AD_17-non-lesional-3.2591918-0\""/><sample-group id=\""SMG346519\"" name=\""AD_17-lesional-2.8053527--0.0409961\""/><sample-group id=\""SMG346520\"" name=\""AD_19-non-lesional-2.8508844-0\""/><sample-group id=\""SMG346521\"" name=\""AD_19-lesional-2.5516863-0.0117006\""/><sample-group id=\""SMG346522\"" name=\""AD_20-non-lesional-2.8202362-0\""/><sample-group id=\""SMG346523\"" name=\""AD_20-lesional-2.836501-2.836501\""/><sample-group id=\""SMG346524\"" name=\""AD_21-non-lesional-3.2591915-0\""/><sample-group id=\""SMG346525\"" name=\""AD_21-lesional-3.3311167-3.3311167\""/><sample-group id=\""SMG346526\"" name=\""AD_23-non-lesional-2.9537284-0\""/><sample-group id=\""SMG346527\"" name=\""AD_23-lesional-3.1728125-3.1728125\""/><sample-group id=\""SMG346528\"" name=\""AD_24-non-lesional-2.7202692-0\""/><sample-group id=\""SMG346529\"" name=\""AD_24-lesional-2.3299654-2.3299654\""/><sample-group id=\""SMG346530\"" name=\""AD_25-non-lesional-2.9557998-0\""/><sample-group id=\""SMG346531\"" name=\""AD_25-lesional-2.3903148-2.3903148\""/><sample-group id=\""SMG346532\"" name=\""AD_26-non-lesional-2.8463488-0\""/><sample-group id=\""SMG346533\"" name=\""AD_26-lesional-2.4562292-2.4562292\""/><sample-group id=\""SMG346534\"" name=\""AD_27-non-lesional-3.194871-0\""/><sample-group id=\""SMG346535\"" name=\""AD_27-lesional-3.0064259-3.0064259\""/><sample-group id=\""SMG346536\"" name=\""AD_28-non-lesional-2.9403362-0\""/><sample-group id=\""SMG346537\"" name=\""AD_28-lesional-2.9465017-2.9465017\""/><sample-group id=\""SMG346538\"" name=\""AD_29-non-lesional-3.0291462-0\""/><sample-group id=\""SMG346539\"" name=\""AD_29-lesional-2.8463488-2.8463488\""/><sample-group id=\""SMG346540\"" name=\""AD_31-non-lesional-2.9700842-0\""/><sample-group id=\""SMG346541\"" name=\""AD_31-lesional-2.5399857-2.5399857\""/></dataset-ref><dataset-ref ref=\""DS5446\""><sample-group id=\""SMG346480\"" name=\""non-lesional\""/><sample-group id=\""SMG346481\"" name=\""lesional\""/></dataset-ref><dataset-ref ref=\""DS5448\""><sample-group id=\""SMG346482\"" name=\""AD_4-lesional-3.1307876-0.2942866\""/><sample-group id=\""SMG346483\"" name=\""AD_5-lesional-2.8492796--0.4818371\""/><sample-group id=\""SMG346484\"" name=\""AD_6-lesional-2.7298582--0.4429543\""/><sample-group id=\""SMG346485\"" name=\""AD_7-lesional-3.6438553-1.3138899\""/><sample-group id=\""SMG346486\"" name=\""AD_9-lesional-2.7756453-0.3853305\""/><sample-group id=\""SMG346487\"" name=\""AD_11-lesional-3.0696192-0.61339\""/><sample-group id=\""SMG346488\"" name=\""AD_14-lesional-3.0150392-0.0086133\""/><sample-group id=\""SMG346489\"" name=\""AD_16-lesional-2.1637545--0.7827472\""/><sample-group id=\""SMG346490\"" name=\""AD_17-lesional-2.8053527--0.0409961\""/><sample-group id=\""SMG346491\"" name=\""AD_19-lesional-2.5516863-0.0117006\""/><sample-group id=\""SMG346492\"" name=\""AD_20-lesional-2.836501-2.836501\""/><sample-group id=\""SMG346493\"" name=\""AD_21-lesional-3.3311167-3.3311167\""/><sample-group id=\""SMG346494\"" name=\""AD_23-lesional-3.1728125-3.1728125\""/><sample-group id=\""SMG346495\"" name=\""AD_24-lesional-2.3299654-2.3299654\""/><sample-group id=\""SMG346496\"" name=\""AD_25-lesional-2.3903148-2.3903148\""/><sample-group id=\""SMG346497\"" name=\""AD_26-lesional-2.4562292-2.4562292\""/><sample-group id=\""SMG346498\"" name=\""AD_27-lesional-3.0064259-3.0064259\""/><sample-group id=\""SMG346499\"" name=\""AD_28-lesional-2.9465017-2.9465017\""/><sample-group id=\""SMG346500\"" name=\""AD_29-lesional-2.8463488-2.8463488\""/><sample-group id=\""SMG346501\"" name=\""AD_31-lesional-2.5399857-2.5399857\""/></dataset-ref></sample-groups><trees><dataset-ref ref=\""DS5447\""/><dataset-ref ref=\""DS5446\""/><dataset-ref ref=\""DS5448\""><tree2d id=\""TR3297\"" name=\""intersection P&lt;0.05 &amp; QC1\""/><tree2d id=\""TR3298\"" name=\""t-test only P&lt;0.05 &amp; QC1\""/><tree2d id=\""TR3300\"" name=\""intersection P&lt;0.05 &amp; NOT QC1\""/><tree2d id=\""TR3299\"" name=\""t-test only P&lt;0.05 &amp; NOT QC1\""/></dataset-ref></trees><pathways/></series>"	1	2026-06-15 11:59:21	paired_edger_deseq2_script.txt	https://www.ncbi.nlm.nih.gov/gds/query/acc.cgi?acc=GSE65832\r\nhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE121212\r\nhttps://www.ncbi.nlm.nih.gov/gds/query/acc.cgi?acc=GSE140227
